PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS722054.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 161aa    MW: 18213.5 Da    PI: 7.9899
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS722054.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.63.9e-122504698
                  EEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3 46 WevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  W+v       ++  +++ GW++Fvk++ L+ +D++vF+++g+s+f  +v vf+
  EcS722054.10  2 WKVGT--MADDENLLFKHGWQDFVKDHALEKNDILVFRYNGESSF--NVLVFN 50
                  99999..888999****************************9999..777775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.324152IPR003340B3 DNA binding domain
PfamPF023624.7E-9249IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-11251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-12251IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-91550No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
AWKVGTMADD ENLLFKHGWQ DFVKDHALEK NDILVFRYNG ESSFNVLVFN QHSLCEKETA  60
YFHKRCSHNP TDRECGTKRK LGDSSVEAMH TPVSYDVKRT LTEDPREDRT VTVADRNILS  120
QAKASENLIE AGASGKPRNK KATPKKKLSV AFDCLEEKPG T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059783.11e-111PREDICTED: B3 domain-containing protein REM16-like isoform X2
RefseqXP_010059786.11e-111PREDICTED: B3 domain-containing protein REM16-like isoform X4
TrEMBLA0A059BJJ91e-111A0A059BJJ9_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-20B3 family protein